A B C D E F G H I L M N P Q R S T U

A

AcceptedOutput - Class in edu.sdsc.inca.depot.persistent

This class represents the accepted output for a reporter and matches with the xml schemas idea of acceptedOutput.

AcceptedOutput() - Constructor for class edu.sdsc.inca.depot.persistent.AcceptedOutput

Default constructor.

AcceptedOutput(String, String) - Constructor for class edu.sdsc.inca.depot.persistent.AcceptedOutput

Full constructor.

ADD - Static variable in class edu.sdsc.inca.depot.commands.SuiteUpdate

addArg(Arg) - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Add the argument to the set and invalidate the current signature.

addReport(Report) - Method in class edu.sdsc.inca.depot.persistent.Series

Add a Report to the set of those associated with this Series.

addSeriesConfig(SeriesConfig) - Method in class edu.sdsc.inca.depot.persistent.Series

Add a SeriesConfig to the set of those associated with this Series.

addSeriesConfig(SeriesConfig) - Method in class edu.sdsc.inca.depot.persistent.Suite

Add a SeriesConfig to the set of those associated with the Suite.

All2AllFilter - Class in edu.sdsc.inca.depot.util

1) Writes pass/fail results to summary.properties file for any reports with the "summary.successpct.performance" reporter name.

All2AllFilter() - Constructor for class edu.sdsc.inca.depot.util.All2AllFilter

All2AllFilterTest - Class in edu.sdsc.inca.depot.util

All2AllFilterTest() - Constructor for class edu.sdsc.inca.depot.util.All2AllFilterTest

Arg - Class in edu.sdsc.inca.depot.persistent

This class represents a command line input to a reporter.

Arg() - Constructor for class edu.sdsc.inca.depot.persistent.Arg

Default constructor.

Arg(String, String) - Constructor for class edu.sdsc.inca.depot.persistent.Arg

Creates an Arg object with the associated name and value.

ArgDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers Arg objects between memory and the DB.

ArgDAO() - Constructor for class edu.sdsc.inca.depot.persistent.ArgDAO

ArgSignature - Class in edu.sdsc.inca.depot.persistent

An ArgSignature consists of a set of arguments, alphabetized and combined into a string.

ArgSignature() - Constructor for class edu.sdsc.inca.depot.persistent.ArgSignature

Default constructor.

ArgSignature(Set) - Constructor for class edu.sdsc.inca.depot.persistent.ArgSignature

Full constructor.

ArgSignatureDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers ArgSignature objects between memory and the DB.

ArgSignatureDAO() - Constructor for class edu.sdsc.inca.depot.persistent.ArgSignatureDAO

ArgSignatureTest - Class in edu.sdsc.inca.depot.persistent

Perform basic tests of the Arg Signature.

ArgSignatureTest() - Constructor for class edu.sdsc.inca.depot.persistent.ArgSignatureTest

ArgTest - Class in edu.sdsc.inca.depot.persistent

Perform Basic tests on the Inputs Class.

ArgTest() - Constructor for class edu.sdsc.inca.depot.persistent.ArgTest

B

beginTransaction() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Start a new database transaction.

C

closeSession() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Closes the Session local to the thread.

commitTransaction() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Commit the database transaction.

compare(AcceptedOutput, Report) - Method in class edu.sdsc.inca.depot.util.ExprComparitor

Compares a report against acceptable output.

ComparisonResult - Class in edu.sdsc.inca.depot.persistent

Represents results of a comparison between accepted values and report output.

ComparisonResult() - Constructor for class edu.sdsc.inca.depot.persistent.ComparisonResult

Default constructor.

ComparisonResultDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers ComparisonResult objects between memory and the DB.

ComparisonResultDAO() - Constructor for class edu.sdsc.inca.depot.persistent.ComparisonResultDAO

context - Variable in class edu.sdsc.inca.depot.util.ReportFilter

createReport(String, String) - Method in class edu.sdsc.inca.depot.persistent.ReportTest

Create the Report object with all of the raw known info.

createSummaryFile(String) - Static method in class edu.sdsc.inca.depot.util.All2AllFilterTest

CRLF - Static variable in class edu.sdsc.inca.depot.commands.InsertTest

D

DAO - Class in edu.sdsc.inca.depot.persistent

This is the base class for the depot DAOs--classes that transfer objects between memory and the depot database.

DAO() - Constructor for class edu.sdsc.inca.depot.persistent.DAO

DB_EMPTY_STRING - Static variable in class edu.sdsc.inca.depot.persistent.PersistentObject

Value used to store null/empty strings in the database.

DELETE - Static variable in class edu.sdsc.inca.depot.commands.SuiteUpdate

Depot - Class in edu.sdsc.inca

The main depot object.

Depot() - Constructor for class edu.sdsc.inca.Depot

Default Constructor.

DEPOT_OPTS - Static variable in class edu.sdsc.inca.Depot

DepotClientTest - Class in edu.sdsc.inca

Created by IntelliJ IDEA.

DepotClientTest() - Constructor for class edu.sdsc.inca.DepotClientTest

disconnectSession() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Disconnect and return Session from current Thread.

doNotification(String, Properties) - Method in class edu.sdsc.inca.depot.util.ScriptNotifier

Invokes a script, w/info about an AcceptedOutput state change in stdin.

DowntimeFilter - Class in edu.sdsc.inca.depot.util

Prefixes error messages in depot reports with "DOWNTIME: +optionalString+: " if the resource the report ran on is in downtime.

DowntimeFilter() - Constructor for class edu.sdsc.inca.depot.util.DowntimeFilter

E

edu.sdsc.inca - package edu.sdsc.inca

edu.sdsc.inca.depot.commands - package edu.sdsc.inca.depot.commands

edu.sdsc.inca.depot.persistent - package edu.sdsc.inca.depot.persistent

edu.sdsc.inca.depot.util - package edu.sdsc.inca.depot.util

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Override of the default equals method.

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.Arg

Compares another object to this Arg for logical equality.

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Compares another object to this ArgSignature for logical equality.

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Compares another object to this InstanceInfo for logical equality.

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.Report

Compares another object to this Report for logical equality.

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Override of the default equals method.

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.Series

Compares another object to this Series for logical equality.

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Compares another object to this SeriesConfig for logical equality.

equals(Object) - Method in class edu.sdsc.inca.depot.persistent.Suite

Compares another object to this Suite for logical equality.

execute(ProtocolReader, ProtocolWriter) - Method in class edu.sdsc.inca.depot.util.HibernateMessageHandler

Overrides regular MessageHandler execute function in order to handle hibernate sessions effectively.

executeHibernateAction(ProtocolReader, ProtocolWriter) - Method in class edu.sdsc.inca.depot.commands.Insert

Execute the insert task.

executeHibernateAction(ProtocolReader, ProtocolWriter) - Method in class edu.sdsc.inca.depot.commands.Query

Execute queries on the depot.

executeHibernateAction(ProtocolReader, ProtocolWriter) - Method in class edu.sdsc.inca.depot.commands.SuiteUpdate

executeHibernateAction(ProtocolReader, ProtocolWriter) - Method in class edu.sdsc.inca.depot.util.HibernateMessageHandler

Execute a hibernate-related task efficiently (i.e., session is safely opened and closed.

ExprComparitor - Class in edu.sdsc.inca.depot.util

Matches the contents of certain tags in a report body against an expected expression.

ExprComparitor() - Constructor for class edu.sdsc.inca.depot.util.ExprComparitor

ExprComparitorTest - Class in edu.sdsc.inca.depot.util

ExprComparitorTest() - Constructor for class edu.sdsc.inca.depot.util.ExprComparitorTest

F

FAILURE_RESULT - Static variable in class edu.sdsc.inca.depot.util.ExprComparitor

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Copies information from an Inca schema XmlBean AcceptedOutput object so that this object contains equivalent information.

fromBean(AcceptedOutput) - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Copies information from an Inca schema XmlBean AcceptedOutput object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.Arg

Copies information from an Inca schema XmlBean Arg object so that this object contains equivalent information.

fromBean(Args.Arg) - Method in class edu.sdsc.inca.depot.persistent.Arg

Copies information from an Inca schema XmlBean Arg object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Copies information from an Inca schema XmlBean Args object so that this object contains equivalent information.

fromBean(Args) - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Copies information from an Inca schema XmlBean Args object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Copies information from an Inca schema XmlBean object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Copies information from an Inca schema XmlBean object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.Limits

Copies information from an Inca schema XmlBean Limits object so that this object contains equivalent information.

fromBean(Limits) - Method in class edu.sdsc.inca.depot.persistent.Limits

Copies information from an Inca schema XmlBean Limits object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.Notification

Copies information from an Inca schema XmlBean Notification object so that this object contains equivalent information.

fromBean(Notifications.Notification) - Method in class edu.sdsc.inca.depot.persistent.Notification

Copies information from an Inca schema XmlBean Notification object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.PersistentObject

Copies information from an Inca schema XmlBean object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.Report

Copies information from an Inca schema XmlBean Report object so that this object contains equivalent information.

fromBean(Report) - Method in class edu.sdsc.inca.depot.persistent.Report

Copies information from an Inca schema XmlBean Report object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Copies information from an Inca schema XmlBean Report object so that this object contains equivalent information.

fromBean(Report) - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Copies information from an Inca schema XmlBean Report object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Copies information from an Inca schema XmlBean Schedule object so that this object contains equivalent information.

fromBean(Schedule) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Copies information from an Inca schema XmlBean Schedule object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.Series

Copies information from an Inca schema XmlBean Series object so that this object contains equivalent information.

fromBean(Report) - Method in class edu.sdsc.inca.depot.persistent.Series

Copies information from an Inca schema XmlBean Report object so that this object contains equivalent information.

fromBean(Series) - Method in class edu.sdsc.inca.depot.persistent.Series

Copies information from an Inca schema XmlBean Series object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Copies information from an Inca schema XmlBean SeriesConfig object so that this object contains equivalent information.

fromBean(SeriesConfig) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Copies information from an Inca schema XmlBean SeriesConfig object so that this object contains equivalent information.

fromBean(XmlObject) - Method in class edu.sdsc.inca.depot.persistent.Suite

Copies information from an Inca schema XmlBean Suite object so that this object contains equivalent information.

fromBean(Suite) - Method in class edu.sdsc.inca.depot.persistent.Suite

Copies information from an Inca schema XmlBean Suite object so that this object contains equivalent information.

G

GCC_BODY - Static variable in class edu.sdsc.inca.depot.util.ExprComparitorTest

GCC_UNIT_BODY - Static variable in class edu.sdsc.inca.depot.util.ExprComparitorTest

generate(String, String, int) - Static method in class edu.sdsc.inca.depot.persistent.Series

Returns a phony Series with a given resource and context.

generate(String, String, int) - Static method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns a phony SeriesConfig with a given resource and context.

generate(String, int) - Static method in class edu.sdsc.inca.depot.persistent.Suite

Returns a phony suite with a given number of unrelated (sharing neither resource nor context) SeriesConfigs.

generateReport() - Method in class edu.sdsc.inca.depot.persistent.Series

Generates a phony report for this Series.

generateReport(Date) - Method in class edu.sdsc.inca.depot.persistent.Series

Generates a phony report for this Series.

getAcceptedOutput() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns comparison and action information for this SeriesConfig.

getAction() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Gets the editing action associated with this SeriesConfig.

getActivated() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns the version number of the Suite under which this SeriesConfig was most recently activated (i.e., its Series was running); -1 if none.

getArgs() - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Retrieve the arguments involved in creating this signature.

getArgs() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the set of Args associated with this Series.

getArgSignature() - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Get the signature for the set of Args associated with this RunInfo.

getArgSignature() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the signature for the set of Args associated with this Series.

getBody() - Method in class edu.sdsc.inca.depot.persistent.Report

Retrieve the body of this report as an XML string.

getBodypart1() - Method in class edu.sdsc.inca.depot.persistent.Report

Retrieve the first part of the body of this report.

getBodypart2() - Method in class edu.sdsc.inca.depot.persistent.Report

Retrieve the second part of the body of this report.

getBodypart3() - Method in class edu.sdsc.inca.depot.persistent.Report

Retrieve the third part of the body of this report.

getCollected() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Retrieve the time this instance was collected.

getCommited() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Retrieve the time this instance was committed.

getComparison() - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Get the comparison portion of the AcceptedOutput.

getComparitor() - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Get the comparitor class name of the AcceptedOutput.

getConfiguration() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Returns the original Hibernate configuration.

getContext() - Method in class edu.sdsc.inca.depot.commands.InsertTest.SuppressingFilter

getContext() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the Series context string.

getContext() - Method in class edu.sdsc.inca.depot.util.ReportFilter

Returns the filtered reporter context.

getCpuTime() - Method in class edu.sdsc.inca.depot.persistent.Limits

getCpuUsageSec() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

get the cpu usage.

getCurrentSession() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Retrieves the current Session local to the thread.

getDeactivated() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns the version number of the Suite under which this SeriesConfig was most recently deactivated (i.e., its Series was suspended); -1 if none.

getDescription() - Method in class edu.sdsc.inca.depot.persistent.Suite

Get the (usually user-supplied) Suite description string.

getExit_message() - Method in class edu.sdsc.inca.depot.persistent.Report

Retrieve the exit message of this report.

getExit_status() - Method in class edu.sdsc.inca.depot.persistent.Report

Retrieve the exit status of this report.

getGuid() - Method in class edu.sdsc.inca.depot.persistent.Suite

Get the guid (agent id + name) of the Suite.

getHostname() - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Get the RunInfo hostname.

getHour() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Return the hour portion of the cron schedule.

getId() - Method in class edu.sdsc.inca.depot.persistent.Arg

Retrieve the id -- null if not yet connected to database.

getId() - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Retrieve the id -- null if not yet connected to database.

getId() - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Retrieve the id -- null if not yet connected to database.

getId() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Retrieve the id -- null if not yet connected to database.

getId() - Method in class edu.sdsc.inca.depot.persistent.Report

Retrieve the id -- null if not yet connected to database.

getId() - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Retrieve the id -- null if not yet connected to database.

getId() - Method in class edu.sdsc.inca.depot.persistent.Series

Retrieve the id -- null if not yet connected to database.

getId() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Retrieve the id -- null if not yet connected to database.

getId() - Method in class edu.sdsc.inca.depot.persistent.Suite

Retrieve the id -- null if not yet connected to database.

getInterceptor() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

getLatestComparisonId() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns the DB id of the latest ComprisonResult associated with this SeriesConfig; -1 if none.

getLatestInstanceId() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns the DB id of the latest InstanceInfo associated with this SeriesConfig; -1 if none.

getLimits() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns the resource limits for this SeriesConfig.

getLog() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Retrieve the log of this InstanceInfo as an XML string.

getMday() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Return the mday portion of the cron schedule.

getMemory() - Method in class edu.sdsc.inca.depot.persistent.Limits

getMemoryUsageMB() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Retrieve the memory usage.

getMinute() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Return the minute portion of the cron schedule.

getMonth() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Return the month portion of the cron schedule.

getName() - Method in class edu.sdsc.inca.depot.persistent.Arg

retrieve the input name.

getName() - Method in class edu.sdsc.inca.depot.persistent.Suite

Get the name of the Suite.

getNice() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the indicator as to whether the Series reporter should be run niced.

getNickname() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Get the user-supplied SeriesConfig nickname.

getNotification() - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Get the notification information of the AcceptedOutput.

getNotifier() - Method in class edu.sdsc.inca.depot.persistent.Notification

Returns the name of the class that performs this notification.

getNumOccurs() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Null implies unlimited.

getReporter() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the Series reporter name.

getReporterPath() - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Get the RunInfo reporter relative path.

getReportId() - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Get the id of the Report that was used in this comparison.

getReportId() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Return the DB id of the report to which this instance is attached.

getReports() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the set of Reports associated with this Series.

getResource() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the name of the resource where this Series runs.

getResource() - Method in class edu.sdsc.inca.depot.util.ReportFilter

Returns the filtered reporter resource name.

getResult() - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Return the result of the comparison in the DB.

getRunInfo() - Method in class edu.sdsc.inca.depot.persistent.Report

Get the RunInfo associated with this Report.

getSchedule() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns the execution schedule for this SeriesConfig.

getSeries() - Method in class edu.sdsc.inca.depot.persistent.Report

Get the Series that this report is part of.

getSeries() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns the Series associated with this SeriesConfig.

getSeriesConfig(int) - Method in class edu.sdsc.inca.depot.persistent.Suite

Retrieves a specified SeriesConfig from the associated set.

getSeriesConfigId() - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Get the id of the SeriesConfig that was used in this comparison.

getSeriesConfigs() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the set of SeriesConfigs associated with this Series.

getSeriesConfigs() - Method in class edu.sdsc.inca.depot.persistent.Suite

Gets the collection of SeriesConfig objects associated with this Suite.

getSessionFactory() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Returns the global SessionFactory.

getSignature() - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

retrieve the signature.

getStderr() - Method in class edu.sdsc.inca.depot.persistent.Report

Retrieve the contents of STDERR output by the reporter.

getStderr() - Method in class edu.sdsc.inca.depot.util.ReportFilter

Returns the filtered reporter stderr output.

getStdout() - Method in class edu.sdsc.inca.depot.commands.InsertTest.ModifyingFilter

getStdout() - Method in class edu.sdsc.inca.depot.commands.InsertTest.TestReportFilter

getStdout() - Method in class edu.sdsc.inca.depot.util.All2AllFilter

Writes results to properties file if name is summary.successpct.performance Writes new report with modified error message to depot if not at fault.

getStdout() - Method in class edu.sdsc.inca.depot.util.DowntimeFilter

Writes new report with modified error message to depot if resource is down

getStdout() - Method in class edu.sdsc.inca.depot.util.ReportFilter

Returns the filtered reporter stdout output.

getSuite() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns the Suite associated with this SeriesConfig.

getSuspended() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Returns whether or not further execution has been suspended pending a user request to resume.

getSysusage() - Method in class edu.sdsc.inca.depot.util.ReportFilter

Returns the filtered reporter system resource usage report.

getTarget() - Method in class edu.sdsc.inca.depot.persistent.Notification

Returns the target that is sent this notification.

getType() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Returns the type of schedule.

getUri() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the Series reporter URI.

getValue() - Method in class edu.sdsc.inca.depot.persistent.Arg

retrieve the input value.

getVersion() - Method in class edu.sdsc.inca.depot.persistent.Series

Get the Series reporter version.

getVersion() - Method in class edu.sdsc.inca.depot.persistent.Suite

Get the version number of the Suite--the number of times updated.

getWallClockTime() - Method in class edu.sdsc.inca.depot.persistent.Limits

getWallClockTimeSec() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Get the length of time this reporter took to run.

getWday() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Return the wday portion of the cron schedule.

getWorkingDir() - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Get the RunInfo working directory.

GLOBUS_BODY - Static variable in class edu.sdsc.inca.depot.util.ExprComparitorTest

H

hashCode() - Method in class edu.sdsc.inca.depot.persistent.Arg

Calculate a hash code using the same fields that where used in equals.

hashCode() - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Calculate a hash code using the same fields that where used in equals.

hashCode() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Calculate a hash code using the same fields that where used in equals.

hashCode() - Method in class edu.sdsc.inca.depot.persistent.Report

hashCode() - Method in class edu.sdsc.inca.depot.persistent.Series

Calculate a hash code using the same fields that where used in equals.

hashCode() - Method in class edu.sdsc.inca.depot.persistent.Suite

Calculate a hash code using the same fields that where used in equals.

HibernateMessageHandler - Class in edu.sdsc.inca.depot.util

Created by IntelliJ IDEA.

HibernateMessageHandler() - Constructor for class edu.sdsc.inca.depot.util.HibernateMessageHandler

HibernateUtil - Class in edu.sdsc.inca.depot.persistent

Basic Hibernate helper class, handles SessionFactory, Session and Transaction.

HibernateUtil() - Constructor for class edu.sdsc.inca.depot.persistent.HibernateUtil

I

incrementVersion() - Method in class edu.sdsc.inca.depot.persistent.Suite

Add 1 to the version number of the Suite--the number of times updated.

initDb - Variable in class edu.sdsc.inca.Depot

initializeDatabase() - Method in class edu.sdsc.inca.Depot

Initialize the Inca database.

Insert - Class in edu.sdsc.inca.depot.commands

The task that will take a report and insert it to the database.

Insert() - Constructor for class edu.sdsc.inca.depot.commands.Insert

InsertTest - Class in edu.sdsc.inca.depot.commands

User: cmills Date: Mar 24, 2005 Time: 3:25:08 PM For now this class is just required to be able to have the following conversation REPORT SP bogus.name CRLF STDOUT SP {xml data} CRLF SYSUSAGE SP ignored CRLF

This implies that the depot will be able to injest a report that has no errors.

InsertTest() - Constructor for class edu.sdsc.inca.depot.commands.InsertTest

InsertTest.ModifyingFilter - Class in edu.sdsc.inca.depot.commands

InsertTest.ModifyingFilter() - Constructor for class edu.sdsc.inca.depot.commands.InsertTest.ModifyingFilter

InsertTest.SuppressingFilter - Class in edu.sdsc.inca.depot.commands

InsertTest.SuppressingFilter() - Constructor for class edu.sdsc.inca.depot.commands.InsertTest.SuppressingFilter

InsertTest.TestReportFilter - Class in edu.sdsc.inca.depot.commands

InsertTest.TestReportFilter() - Constructor for class edu.sdsc.inca.depot.commands.InsertTest.TestReportFilter

InstanceInfo - Class in edu.sdsc.inca.depot.persistent

Represents information specific to a particular instance of a reporter run.

InstanceInfo() - Constructor for class edu.sdsc.inca.depot.persistent.InstanceInfo

Default constructor.

InstanceInfo(Date, Date, Float, Float, Float) - Constructor for class edu.sdsc.inca.depot.persistent.InstanceInfo

Full constructor.

InstanceInfo(Date, String) - Constructor for class edu.sdsc.inca.depot.persistent.InstanceInfo

A constructor that parses the Inca protocol SYSUSAGE message.

InstanceInfoDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers InstanceInfo objects between memory and the DB.

InstanceInfoDAO() - Constructor for class edu.sdsc.inca.depot.persistent.InstanceInfoDAO

invoked - Static variable in class edu.sdsc.inca.depot.commands.InsertTest.TestReportFilter

L

Limits - Class in edu.sdsc.inca.depot.persistent

Basic Limits class; matches the idea of Limits in the xsd for inca.

Limits() - Constructor for class edu.sdsc.inca.depot.persistent.Limits

Limits(int, int, int) - Constructor for class edu.sdsc.inca.depot.persistent.Limits

This constructor mainly helps out with testing; it won't be used in coding, because we will be using the set function.

load(Arg) - Static method in class edu.sdsc.inca.depot.persistent.ArgDAO

Returns an Arg object from the DB with the same field values as one specified, or null if no such object appears in the DB.

load(ArgSignature) - Static method in class edu.sdsc.inca.depot.persistent.ArgSignatureDAO

Returns an ArgSignature object from the DB with the same field values as one specified, or null if no such object appears in the DB.

load(ComparisonResult) - Static method in class edu.sdsc.inca.depot.persistent.ComparisonResultDAO

Returns a ComparisonResult from the DB with the same field values as one specified, null if no such ComparisonResult appears in the DB.

load(Long) - Static method in class edu.sdsc.inca.depot.persistent.ComparisonResultDAO

Returns a ComparisonResult object from the DB with the id specified, null if no such object appears in the DB.

load(Long) - Static method in class edu.sdsc.inca.depot.persistent.InstanceInfoDAO

Returns an InstanceInfo object from the DB with the id specified, null if no such object appears in the DB.

load(Report) - Static method in class edu.sdsc.inca.depot.persistent.ReportDAO

Returns a Report object from the DB with the same field values as one specified, null if no such object appears in the DB.

load(Long) - Static method in class edu.sdsc.inca.depot.persistent.ReportDAO

Returns a Report object from the DB with the id specified, null if no such object appears in the DB.

load(RunInfo) - Static method in class edu.sdsc.inca.depot.persistent.RunInfoDAO

Returns a RunInfo from the DB with the same field values as one specified, null if no such RunInfo appears in the DB.

load(Long) - Static method in class edu.sdsc.inca.depot.persistent.SeriesConfigDAO

Returns a SeriesConfig object from the DB with the id specified, null if no such object appears in the DB.

load(Series) - Static method in class edu.sdsc.inca.depot.persistent.SeriesDAO

Returns a Series from the DB with the same field values as one specified, null if no such Series appears in the DB.

load(Suite) - Static method in class edu.sdsc.inca.depot.persistent.SuiteDAO

Returns a Suite from the DB with the same field values as one specified, null if no such Suite appears in the DB.

loadOrSave(Arg) - Static method in class edu.sdsc.inca.depot.persistent.ArgDAO

Returns an Arg object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

loadOrSave(ArgSignature) - Static method in class edu.sdsc.inca.depot.persistent.ArgSignatureDAO

Returns an ArgSignature object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

loadOrSave(ComparisonResult) - Static method in class edu.sdsc.inca.depot.persistent.ComparisonResultDAO

Returns a ComparisonResult object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

loadOrSave(InstanceInfo) - Static method in class edu.sdsc.inca.depot.persistent.InstanceInfoDAO

Returns an InstanceInfo object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

loadOrSave(Report) - Static method in class edu.sdsc.inca.depot.persistent.ReportDAO

Returns a Report object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

loadOrSave(RunInfo) - Static method in class edu.sdsc.inca.depot.persistent.RunInfoDAO

Returns a RunInfo object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

loadOrSave(SeriesConfig) - Static method in class edu.sdsc.inca.depot.persistent.SeriesConfigDAO

Returns a SeriesConfig object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

loadOrSave(Series) - Static method in class edu.sdsc.inca.depot.persistent.SeriesDAO

Returns a Series object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

loadOrSave(Suite) - Static method in class edu.sdsc.inca.depot.persistent.SuiteDAO

Returns a Suite object from the DB with the same field values as one specified, or the saved version of the specified object if no such object appears in the DB.

logger - Static variable in class edu.sdsc.inca.Depot

logger - Static variable in class edu.sdsc.inca.depot.persistent.DAO

logger - Static variable in class edu.sdsc.inca.depot.persistent.PersistentObject

logger - Static variable in class edu.sdsc.inca.depot.persistent.PersistentTest

logger used by all persistent tests.

M

main(String[]) - Static method in class edu.sdsc.inca.Depot

Start the depot from the command line.

MalformedInputException - Class in edu.sdsc.inca.depot.persistent

MalformedInputException(String) - Constructor for class edu.sdsc.inca.depot.persistent.MalformedInputException

Throw a new exception with this error string.

MalformedInputException(String, Throwable) - Constructor for class edu.sdsc.inca.depot.persistent.MalformedInputException

Throw a new exception that restulted from a catch of another.

MAX_DB_LONG_STRING_LENGTH - Static variable in class edu.sdsc.inca.depot.persistent.PersistentObject

MAX_DB_STRING_LENGTH - Static variable in class edu.sdsc.inca.depot.persistent.PersistentObject

Maximum length for string DB fields.

N

nextEvent(Date) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Returns the first date/time after a specified date/time that this schedule will cause an event.

Notification - Class in edu.sdsc.inca.depot.persistent

Notification() - Constructor for class edu.sdsc.inca.depot.persistent.Notification

Default constructor.

Notification(String, String) - Constructor for class edu.sdsc.inca.depot.persistent.Notification

Full constructor.

P

PersistenceException - Exception in edu.sdsc.inca.depot.persistent

PersistenceException(String) - Constructor for exception edu.sdsc.inca.depot.persistent.PersistenceException

Create the exception with the given message.

PersistenceException(String, Throwable) - Constructor for exception edu.sdsc.inca.depot.persistent.PersistenceException

Create the exception with the given message and cause.

PersistentObject - Class in edu.sdsc.inca.depot.persistent

This is an abstract base class that defines common behavior for all objects that the Depot stores in the database.

PersistentObject() - Constructor for class edu.sdsc.inca.depot.persistent.PersistentObject

PersistentTest - Class in edu.sdsc.inca.depot.persistent

Implement the setup and teardown function for all the PersistentTests.

PersistentTest() - Constructor for class edu.sdsc.inca.depot.persistent.PersistentTest

Q

Query - Class in edu.sdsc.inca.depot.commands

Query() - Constructor for class edu.sdsc.inca.depot.commands.Query

QueryTest - Class in edu.sdsc.inca.depot.commands

QueryTest() - Constructor for class edu.sdsc.inca.depot.commands.QueryTest

R

rebuildSessionFactory() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Rebuild the SessionFactory with the static Configuration.

rebuildSessionFactory(Configuration) - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Rebuild the SessionFactory with the given Hibernate Configuration.

reconnect(Session) - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Reconnects a Hibernate Session to the current Thread.

registerInterceptorAndRebuild(Interceptor) - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Register a Hibernate interceptor with the current SessionFactory.

removeDatabase() - Method in class edu.sdsc.inca.Depot

Delete the Inca database.

Report - Class in edu.sdsc.inca.depot.persistent

This class represents the output from a Single Reporter.

Report() - Constructor for class edu.sdsc.inca.depot.persistent.Report

Default constructor.

Report(Boolean, String, String, Series) - Constructor for class edu.sdsc.inca.depot.persistent.Report

Full constructor.

ReportDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers Report objects between memory and the DB.

ReportDAO() - Constructor for class edu.sdsc.inca.depot.persistent.ReportDAO

ReportFilter - Class in edu.sdsc.inca.depot.util

A class that allows an Inca installation to make changes to incoming reports before they're processed by the Depot.

ReportFilter() - Constructor for class edu.sdsc.inca.depot.util.ReportFilter

Constructs a new ReportFilter.

ReportTest - Class in edu.sdsc.inca.depot.persistent

Tests basic Report functionality.

ReportTest() - Constructor for class edu.sdsc.inca.depot.persistent.ReportTest

resource - Variable in class edu.sdsc.inca.depot.util.ReportFilter

rmDb - Variable in class edu.sdsc.inca.Depot

rollbackTransaction() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Rollback the database transaction.

RunInfo - Class in edu.sdsc.inca.depot.persistent

Represents host-specific execution information derived from a Report.

RunInfo() - Constructor for class edu.sdsc.inca.depot.persistent.RunInfo

Default constructor.

RunInfo(String, String, String) - Constructor for class edu.sdsc.inca.depot.persistent.RunInfo

Full constructor.

RunInfoDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers RunInfo objects between memory and the DB.

RunInfoDAO() - Constructor for class edu.sdsc.inca.depot.persistent.RunInfoDAO

S

save(Object) - Static method in class edu.sdsc.inca.depot.persistent.DAO

Stores an object that has not previously been saved in the database.

saveReportAndSeries(Report) - Method in class edu.sdsc.inca.depot.persistent.ReportTest

Schedule - Class in edu.sdsc.inca.depot.persistent

Schedule holds the information for a cron-like schedule that we use.

Schedule() - Constructor for class edu.sdsc.inca.depot.persistent.Schedule

Default constructor.

Schedule(String, String, String, String, String, String, Integer) - Constructor for class edu.sdsc.inca.depot.persistent.Schedule

Full constructor.

ScheduleTest - Class in edu.sdsc.inca.depot.persistent

Basic tests to check for Schedule functionality.

ScheduleTest() - Constructor for class edu.sdsc.inca.depot.persistent.ScheduleTest

ScriptNotifier - Class in edu.sdsc.inca.depot.util

A class that notifies a target script about a state change in AcceptableOutput.

ScriptNotifier() - Constructor for class edu.sdsc.inca.depot.util.ScriptNotifier

sdf - Static variable in class edu.sdsc.inca.depot.persistent.ScheduleTest

selectMultiple(String, Object[]) - Static method in class edu.sdsc.inca.depot.persistent.DAO

Return the set of objects selected by a Hibernate query.

selectUnique(String, Object[]) - Static method in class edu.sdsc.inca.depot.persistent.DAO

Return the unique object selected by a Hibernate query.

Series - Class in edu.sdsc.inca.depot.persistent

Series() - Constructor for class edu.sdsc.inca.depot.persistent.Series

Default constructor.

Series(String, String, String) - Constructor for class edu.sdsc.inca.depot.persistent.Series

Constructs a new Series containing the specified values.

SeriesConfig - Class in edu.sdsc.inca.depot.persistent

A SeriesConfig Represents the configuration of a Series as part of a Suite.

SeriesConfig() - Constructor for class edu.sdsc.inca.depot.persistent.SeriesConfig

Default constructor.

SeriesConfig(Suite, Series) - Constructor for class edu.sdsc.inca.depot.persistent.SeriesConfig

Full constructor.

SeriesConfigDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers SeriesConfig objects between memory and the DB.

SeriesConfigDAO() - Constructor for class edu.sdsc.inca.depot.persistent.SeriesConfigDAO

SeriesConfigTest - Class in edu.sdsc.inca.depot.persistent

Test the functionality of the SeriesConfig and SeriesConfigDAO classes.

SeriesConfigTest() - Constructor for class edu.sdsc.inca.depot.persistent.SeriesConfigTest

SeriesDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers Series objects between memory and the DB.

SeriesDAO() - Constructor for class edu.sdsc.inca.depot.persistent.SeriesDAO

SeriesTest - Class in edu.sdsc.inca.depot.persistent

Basic tests to check for Series functionality.

SeriesTest() - Constructor for class edu.sdsc.inca.depot.persistent.SeriesTest

setAcceptedOutput(AcceptedOutput) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets comparison and action information for this SeriesConfig.

setAction(String) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the editing action associated with this SeriesConfig.

setActivated(int) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the version number of the Suite under which this SeriesConfig was most recently activated (i.e., its Series was running); -1 if none.

setArgs(Set) - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

For internal use.

setArgs(Set) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the set of Args associated with this Series.

setArgSignature(ArgSignature) - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Set the signature for the set of Args associated with this RunInfo.

setArgSignature(ArgSignature) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the signature for the set of Args associated with this Series.

setBody(String) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the body of this report.

setBodypart1(String) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the second part of the body of this report.

setBodypart2(String) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the second part of the body of this report.

setBodypart3(String) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the third part of the body of this report.

setCollected(Date) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Set the time this data was collected.

setCommited(Date) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

set the thime this data was commited to db.

setComparison(String) - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Set the comparison of the AcceptedOutput.

setComparitor(String) - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Set the comparitor class name of the AcceptedOutput.

setConfiguration(Properties) - Method in class edu.sdsc.inca.Depot

A convenience function for setting multiple configuration properties at once.

setContext(String) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the Series context string.

setContext(String) - Method in class edu.sdsc.inca.depot.util.ReportFilter

Sets the filtered reporter context.

setCpuTime(Float) - Method in class edu.sdsc.inca.depot.persistent.Limits

setCpuUsageSec(Float) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Set the cup usage.

setDeactivated(int) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the version number of the Suite under which this SeriesConfig was most recently deactivated (i.e., its Series was suspended); -1 if none.

setDescription(String) - Method in class edu.sdsc.inca.depot.persistent.Suite

Set the (usually user-supplied) Suite description string.

setExit_message(String) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the exit message of this report.

setExit_status(Boolean) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the exit status of this report.

setGuid(String) - Method in class edu.sdsc.inca.depot.persistent.Suite

Set the guid (agent id + name) of the Suite.

setHostname(String) - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Set the RunInfo hostname.

setHour(String) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Set the hour portion of the cron schedule.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.Arg

Set the id.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Set the id.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Set the id.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Set the id.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the id.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Set the id.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the id.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Set the id.

setId(Long) - Method in class edu.sdsc.inca.depot.persistent.Suite

Set the id.

setLatestComparisonId(Long) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the DB id of the latest ComparisonResult associated with this SeriesConfig; -1 if none.

setLatestInstanceId(Long) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the DB id of the latest InstanceInfo associated with this SeriesConfig; -1 if none.

setLimits(Limits) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the resource limits for this SeriesConfig.

setLog(String) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Set the log of this InstanceInfo.

setMday(String) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Set the month day portion of the schedule.

setMemory(Float) - Method in class edu.sdsc.inca.depot.persistent.Limits

setMemoryUsageMB(Float) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Set the memory usage.

setMinute(String) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Set the minute portion of the cron schedule.

setMonth(String) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Set the month portion of the cron schedule.

setName(String) - Method in class edu.sdsc.inca.depot.persistent.Arg

set the input name.

setName(String) - Method in class edu.sdsc.inca.depot.persistent.Suite

Set the name of the Suite.

setNice(boolean) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the indicator as to whether the Series reporter should be run niced.

setNickname(String) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Set the user-supplied SeriesConfig nickname.

setNotification(Notification) - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Set the notification information of the AcceptedOutput.

setNotifier(String) - Method in class edu.sdsc.inca.depot.persistent.Notification

Sets the name of the class that performs this notification.

setNumOccurs(Integer) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Set the number of times the schedule should be run before being discarded.

setReporter(String) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the Series reporter name.

setReporterPath(String) - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Set the RunInfo reporter relative.

setReportId(Long) - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Set the id of the report that was used in this comparison.

setReportId(Long) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Set the DB id of the report to which this instance is attached.

setReports(Collection) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the set of Reports associated with this Series.

setResource(String) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the name of the resource where this Series runs.

setResource(String) - Method in class edu.sdsc.inca.depot.util.ReportFilter

Sets the filtered reporter resource name.

setResult(String) - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Set the result of the comparison.

setRunInfo(RunInfo) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the RunInfo associated with this Report.

setSchedule(Schedule) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the execution schedule for this SeriesConfig.

setSeries(Series) - Method in class edu.sdsc.inca.depot.persistent.Report

set the report series that this report is part of.

setSeries(Series) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the Series associated with this SeriesConfig.

setSeriesConfigId(Long) - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Set the id of the SeriesConfig that was used in this comparison.

setSeriesConfigs(Set) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the set of SeriesConfigs associated with this Series.

setSeriesConfigs(Set) - Method in class edu.sdsc.inca.depot.persistent.Suite

Sets the collection of SeriesConfig objects associated with this Suite.

setSignature(String) - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Set the Signature to this previously-computed signature.

setStderr(String) - Method in class edu.sdsc.inca.depot.persistent.Report

Set the contents of stderr -- can be used for querying or by Hibernate.

setStderr(String) - Method in class edu.sdsc.inca.depot.util.ReportFilter

Sets the filtered reporter stderr output.

setStdout(String) - Method in class edu.sdsc.inca.depot.util.ReportFilter

Sets the filtered reporter stdout output.

setSuite(Suite) - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Sets the Suite associated with this SeriesConfig.

setSuspended(boolean) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Indicates whether or not further execution should be suspended pending a user request to resume.

setSysusage(String) - Method in class edu.sdsc.inca.depot.util.ReportFilter

Sets the filtered reporter system resource usage report.

setTarget(String) - Method in class edu.sdsc.inca.depot.persistent.Notification

Set the target that is sent this notification.

setType(String) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Set the type of schedule.

setUp() - Method in class edu.sdsc.inca.depot.persistent.PersistentTest

Create the empty database to start with.

setUri(String) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the Series reporter URI.

setValue(String) - Method in class edu.sdsc.inca.depot.persistent.Arg

retrieve the input value.

setVersion(String) - Method in class edu.sdsc.inca.depot.persistent.Series

Set the Series reporter version.

setVersion(int) - Method in class edu.sdsc.inca.depot.persistent.Suite

Set the version number of the Suite--the number of times updated.

setWallClockTime(Float) - Method in class edu.sdsc.inca.depot.persistent.Limits

setWallClockTimeSec(Float) - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Set the amount of time this reporter took to run.

setWday(String) - Method in class edu.sdsc.inca.depot.persistent.Schedule

Set the week day portion of the schedule.

setWorkingDir(String) - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Set the RunInfo working directory.

shutdown() - Static method in class edu.sdsc.inca.depot.persistent.HibernateUtil

Closes the current SessionFactory and releases all resources.

stderr - Variable in class edu.sdsc.inca.depot.util.ReportFilter

stdout - Variable in class edu.sdsc.inca.depot.util.ReportFilter

SUCCESS_RESULT - Static variable in class edu.sdsc.inca.depot.util.ExprComparitor

Suite - Class in edu.sdsc.inca.depot.persistent

A Suite is a named collection of SeriesConfigs.

Suite() - Constructor for class edu.sdsc.inca.depot.persistent.Suite

Default constructor.

Suite(String, String, String) - Constructor for class edu.sdsc.inca.depot.persistent.Suite

Constructs a new Suite containing the specified values.

SuiteDAO - Class in edu.sdsc.inca.depot.persistent

This class transfers Suite objects between memory and the DB.

SuiteDAO() - Constructor for class edu.sdsc.inca.depot.persistent.SuiteDAO

SuiteTest - Class in edu.sdsc.inca.depot.persistent

Test the functionality of the Suite and SuiteDAO classes.

SuiteTest() - Constructor for class edu.sdsc.inca.depot.persistent.SuiteTest

SuiteUpdate - Class in edu.sdsc.inca.depot.commands

SuiteUpdate() - Constructor for class edu.sdsc.inca.depot.commands.SuiteUpdate

SuiteUpdateTest - Class in edu.sdsc.inca.depot.commands

SuiteUpdateTest() - Constructor for class edu.sdsc.inca.depot.commands.SuiteUpdateTest

sysusage - Variable in class edu.sdsc.inca.depot.util.ReportFilter

T

tearDown() - Method in class edu.sdsc.inca.depot.persistent.PersistentTest

clean up after tests.

testAddSeries() - Method in class edu.sdsc.inca.depot.commands.SuiteUpdateTest

testAlpha() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testArgs() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testAtFaultFailure() - Method in class edu.sdsc.inca.depot.util.All2AllFilterTest

testBasicInsert() - Method in class edu.sdsc.inca.depot.commands.SuiteUpdateTest

testConjunctions() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testConstructor() - Method in class edu.sdsc.inca.depot.persistent.ReportTest

Basic test of the constructor.

testConstructors() - Method in class edu.sdsc.inca.depot.persistent.ArgSignatureTest

testConstructors() - Method in class edu.sdsc.inca.depot.persistent.ArgTest

test that raw inputs can be parsed and that malformed inputs are caught.

testConstructors() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the class constructors.

testConstructors() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfigTest

Test the SeriesConfig class constructors.

testConstructors() - Method in class edu.sdsc.inca.depot.persistent.SeriesTest

testConstructors() - Method in class edu.sdsc.inca.depot.persistent.SuiteTest

Test the Suite class constructors.

testCronList() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the nextEvent method against a cron schedule w/lists.

testCronRange() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the nextEvent method against a cron schedule w/ranges.

testCronStep() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the nextEvent method against a cron schedule w/a step.

testDailyEvent() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the nextEvent method against a daily cron schedule.

testDeactivateSeries() - Method in class edu.sdsc.inca.depot.commands.SuiteUpdateTest

testDifferentDigits() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testDuplicateInsert() - Method in class edu.sdsc.inca.depot.commands.InsertTest

testEquivalentConfigs() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests that Insert picks up CRs from equivalent series configs.

testFailureHistory() - Method in class edu.sdsc.inca.depot.commands.QueryTest

testFailureMessage() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testFromBean() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfigTest

Test SeriesConfigDAO's fromBean method.

testFromBean() - Method in class edu.sdsc.inca.depot.persistent.SuiteTest

Test SuiteDAO's fromBean method.

testGetGuids() - Method in class edu.sdsc.inca.depot.commands.QueryTest

testGetLatest() - Method in class edu.sdsc.inca.depot.commands.QueryTest

testGetPeriod() - Method in class edu.sdsc.inca.depot.commands.QueryTest

testHourlyEvent() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the nextEvent method against an hourly cron schedule.

testHql() - Method in class edu.sdsc.inca.depot.commands.QueryTest

testImmediateInsert() - Method in class edu.sdsc.inca.depot.commands.SuiteUpdateTest

testInvalidXml() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests a malformed report.

testLongLog() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests an excessive report log section.

testMissingFile() - Method in class edu.sdsc.inca.depot.util.All2AllFilterTest

testMonthlyEvent() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the nextEvent method against a monthly cron schedule.

testNoArgs() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests a series w/no arguments.

testNoSuiteFound() - Method in class edu.sdsc.inca.depot.commands.QueryTest

testNotAtFaultFailure() - Method in class edu.sdsc.inca.depot.util.All2AllFilterTest

testOutOfOrder() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests what happens when reports arrive out-of-order.

testPackageName() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testParentheses() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testPartitioning() - Method in class edu.sdsc.inca.depot.persistent.ReportTest

Test partitioning of long bodies.

testPatterns() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testPersistence() - Method in class edu.sdsc.inca.depot.persistent.ArgSignatureTest

testPersistence() - Method in class edu.sdsc.inca.depot.persistent.ArgTest

Insert 2 identical name value pairs.

testPersistence() - Method in class edu.sdsc.inca.depot.persistent.SeriesTest

Tests loading a single instance.

testPersistReport() - Method in class edu.sdsc.inca.depot.persistent.ReportTest

basic test of persisting a report.

testPoints() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testPredefinedIds() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testQueryInstance() - Method in class edu.sdsc.inca.DepotClientTest

testQuerySuite() - Method in class edu.sdsc.inca.DepotClientTest

testQuote() - Method in class edu.sdsc.inca.depot.persistent.ArgTest

Test to see if we can save/query values with quotes.

testReactivateSeries() - Method in class edu.sdsc.inca.depot.commands.SuiteUpdateTest

testReportFilter() - Method in class edu.sdsc.inca.depot.commands.InsertTest

testSimpleConstants() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testSubpackageNames() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testSuccessHistory() - Method in class edu.sdsc.inca.depot.commands.QueryTest

testSummaryReport() - Method in class edu.sdsc.inca.depot.util.All2AllFilterTest

testTruncation() - Method in class edu.sdsc.inca.depot.persistent.ArgTest

Test to see that too-long arg names/values are properly truncated.

testValuelessId() - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

testWeeklyEvent() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the nextEvent method against a weekly cron schedule.

testWithClassNotifier() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests backward compatibility for notifiers that specify a Java class.

testWithComparitor() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests reports for a SeriesConfig that includes a comparitor.

testWithLogNotifier() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests reports for a SeriesConfig that includes a log notifier.

testWithScriptNotifier() - Method in class edu.sdsc.inca.depot.commands.InsertTest

Tests reports for a SeriesConfig that includes a script notifier.

testXMLStuff() - Method in class edu.sdsc.inca.depot.persistent.ReportTest

testYearlyEvent() - Method in class edu.sdsc.inca.depot.persistent.ScheduleTest

Tests the nextEvent method against a yearly cron schedule.

toBean(SeriesConfig, Report, InstanceInfo, ComparisonResult) - Static method in class edu.sdsc.inca.depot.commands.Query

Creates a ReportDetailsDocument by copying fields from a DB SeriesConfig, a DB report, and a DB InstanceInfo.

toBean(SeriesConfig, ComparisonResult, InstanceInfo, Report) - Static method in class edu.sdsc.inca.depot.commands.Query

Creates a ReportSummaryDocument by copying fields from a DB SeriesConfig.

toBean() - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

Returns a Inca schema XmlBean AcceptedOutput object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.Arg

Returns a Inca schema XmlBean Arg object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Returns a Inca schema XmlBean Args object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Returns a Inca schema XmlBean object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Returns a Inca schema XmlBean Limits object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.Limits

Returns a Inca schema XmlBean Limits object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.Notification

Returns a Inca schema XmlBean Notification object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.PersistentObject

Returns a Inca schema XmlBean object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.Report

Returns a Inca schema XmlBean Report object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Returns a Inca schema XmlBean object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.Schedule

Returns a Inca schema XmlBean Schedule object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.Series

Returns a Inca schema XmlBean Series object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns a Inca schema XmlBean SeriesConfig object that contains information equivalent to this object.

toBean() - Method in class edu.sdsc.inca.depot.persistent.Suite

Returns a Inca schema XmlBean Suite object that contains information equivalent to this object.

toString() - Method in class edu.sdsc.inca.depot.persistent.AcceptedOutput

toString() - Method in class edu.sdsc.inca.depot.persistent.Arg

For debugging purposes.

toString() - Method in class edu.sdsc.inca.depot.persistent.ArgSignature

Override of the default toString method.

toString() - Method in class edu.sdsc.inca.depot.persistent.Schedule

toString() - Method in class edu.sdsc.inca.depot.persistent.Series

Returns a string representation of this Series.

toString() - Method in class edu.sdsc.inca.depot.persistent.SeriesConfig

Returns a string representation of this SeriesConfig.

toXml() - Method in class edu.sdsc.inca.depot.persistent.ComparisonResult

Returns XML that represents the information in this object.

toXml() - Method in class edu.sdsc.inca.depot.persistent.InstanceInfo

Returns XML that represents the information in this object.

toXml() - Method in class edu.sdsc.inca.depot.persistent.PersistentObject

Returns XML that represents the information in this object.

toXml() - Method in class edu.sdsc.inca.depot.persistent.RunInfo

Returns XML that represents the information in this object.

toXml() - Method in class edu.sdsc.inca.depot.persistent.Suite

Returns XML text for this Suite.

truncate(String, int, String) - Method in class edu.sdsc.inca.depot.persistent.PersistentObject

A convenience function for implementations that checks the length of a string and truncates with a warning if it's too long.

tryIt(String, Report, boolean) - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

tryIt(String, String, boolean) - Method in class edu.sdsc.inca.depot.util.ExprComparitorTest

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update(Arg) - Static method in class edu.sdsc.inca.depot.persistent.ArgDAO

A wrapper around DAO.update that handles the necessary casting.

update(ArgSignature) - Static method in class edu.sdsc.inca.depot.persistent.ArgSignatureDAO

A wrapper around DAO.update that handles the necessary casting.

update(ComparisonResult) - Static method in class edu.sdsc.inca.depot.persistent.ComparisonResultDAO

A wrapper around DAO.update that handles the necessary casting.

update(Object) - Static method in class edu.sdsc.inca.depot.persistent.DAO

Updates an object that has previously been saved in the database.

update(InstanceInfo) - Static method in class edu.sdsc.inca.depot.persistent.InstanceInfoDAO

A wrapper around DAO.update that handles the necessary casting.

update(Report) - Static method in class edu.sdsc.inca.depot.persistent.ReportDAO

A wrapper around DAO.update that handles the necessary casting.

update(RunInfo) - Static method in class edu.sdsc.inca.depot.persistent.RunInfoDAO

A wrapper around DAO.update that handles the necessary casting.

update(SeriesConfig) - Static method in class edu.sdsc.inca.depot.persistent.SeriesConfigDAO

A wrapper around DAO.update that handles the necessary casting.

update(Series) - Static method in class edu.sdsc.inca.depot.persistent.SeriesDAO

A wrapper around DAO.update that handles the necessary casting.

update(Suite) - Static method in class edu.sdsc.inca.depot.persistent.SuiteDAO

A wrapper around DAO.update that handles the necessary casting.

updateSuite(Suite) - Method in class edu.sdsc.inca.depot.commands.SuiteUpdateTest

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